Fuentes S, et al. (2021) data in which the authors investigated associations between gut microbiota in respiratory infections and local and systemic immune markers in older adults during an influenza season.
data(FuentesIliGutData)Phyloseq object
Loads the data set in R.
FuentesIliGutData consists of 905 taxa (ASV-level) in 589 samples from 397 participants. The samples include follow-up (recovery) samples that were collected 7–9 weeks after the ILI event. Data on co-morbidities, medications, symptoms, pathogens are made available.
Fuentes S, et al. (2021) Associations of faecal microbiota with influenza-like illness in participants aged 60 years or older: an observational study. The Lancet Healthy Longevity, 2(1):e13-23. https://doi.org/10.1016/S2666-7568(20)30034-9
Ferreira JA, Fuentes S. (2020). Some comments on certain statistical aspects of the study of the microbiome. Briefings in bioinformatics 21(4), pp.1487-1494. https://doi.org/10.1093/bib/bbz077