Changelog • biomeUtils

Remove cloudStatistic function.
Remove dysbiosisScore function.
Fix getSampleTibble function when SampleID is present in sample_data().

Added cloudStatistic function.

Added getYCTheta function.
Fixed typo dysbiosisScore function.

Added dysbiosisScore function.

Fixed check errors.
Added uniqueness function.
Fixed bug in checkPolyphyletic.

Added filterTaxaTotal functions.
Added transformation functions.

Added chekFilterEffect functions.

Added readMergedMetaphlan.

Added genericUtilities.
Added saveData.

Added pullPhyloseq.
Added separateSampleColumn.
Added uniteSampleColumn.

Handle missing tree in clusterASVs.
Added renameSampleVariables.
Fix pipe section in vignette.

Fixes to getSampleTibble.
Fixes to getPrevalence.
Fixes to calculateTaxaFoldDifference.

Added mutatePhyloseq functions added.
Added checkPolyphyletic functions added.
Minor fixes in documentations.

Added meltDistanceToTable fix.

Added getPrevalence fix.
Vignette addition pipes example.

Added getPhyloseqSlots functions.
Added filterPhyloseq functions.
Improved removeZeros.
Added clusterASVs ASVs to OTUs.
Added calculateQC Calculate QC metrics for taxa and samples.

Added buildSeqTree to build trees from sequences.
Added calculateTaxaFoldDifference to build trees from sequences.
Added cleanTaxonomy to build trees from sequences.
Added getPrevalence
Added calculatePD

Added getTaxaSummary.
Added removeZeros.
Added saveSequence.
Added summarizeTaxonomicAssignments.
Added trendAbundanceAssignment.
Added SprockettTHData example data.

Added comparePhyloseq to compare phyloseq objects.
Added getTibbles create tibbles from phyloseq objects.
Added uniteGenusSpeciesNames.

Added a NEWS.md file to track changes to the package.

Added FuentesIliGutData example data.
First build of the package.